PokerTracker

I'm trying to filter my hands by blind level and it's only letting me do one at a time. For example, I want to see all hands from blind levels 100/200, 200/400, and 300/600, but I only see the option to view them separately. PT3 had the feature where you could check off all the blind levels you want filtered for. Was that taken out?

You can filter for any blind sizes you want by clicking More Filters > Game Details.

Is there any way of filtering by effective stack sizes, not blind level ?

Blind levels are completely irrelevant in hyper turbos because effective stack sizes change so quickly.

Of course. You can find those filters in the Hand Details -> Pot Size and Stack Depth area.